| Program name | Description |
| antigenic |
Finds antigenic sites in proteins
|
| digest |
Protein proteolytic enzyme or reagent cleavage digest
|
| epestfind |
Finds PEST motifs as potential proteolytic cleavage sites
|
| fuzzpro |
Protein pattern search
|
| fuzztran |
Protein pattern search after translation
|
| helixturnhelix |
Report nucleic acid binding motifs
|
| oddcomp |
Find protein sequence regions with a biased composition
|
| patmatdb |
Search a protein sequence with a motif
|
| patmatmotifs |
Search a PROSITE motif database with a protein sequence
|
| pepcoil |
Predicts coiled coil regions
|
| preg |
Regular expression search of a protein sequence
|
| pscan |
Scans proteins using PRINTS
|
| sigcleave |
Reports protein signal cleavage sites
|
| omeme |
Motif detection
|
| emast |
Motif detection
|
| ememe |
Motif detection
|